STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrhDConserved protein YrhD. (159 aa)    
Predicted Functional Partners:
yrhE
Formate dehydrogenase, alpha subunit YrhE.
 
 
 0.998
yjgC
Iron-sulfur binding domain containing protein.
 
 
 0.958
yrhF
Conserved protein YrhF.
 
     0.868
nasC
Assimilatory nitrate reductase (catalytic subunit); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.808
fdhD
FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.746
qoxD
Cytochrome aa3 quinol oxidase (subunit IV).
  
     0.649
cotJA
CotJA.
  
     0.617
BL02739
Hypothetical protein.
  
     0.541
BL02059
Putative oxidoreductase.
  
    0.527
yneA
Peptidoglycan-binding protein YneA; Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and/or DivIC to the division machinery; Belongs to the YneA family.
  
     0.527
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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