STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yutCConserved protein YutC. (207 aa)    
Predicted Functional Partners:
BL05248
Hypothetical protein.
  
     0.770
yutH
Conserved protein YutH.
  
     0.768
yhaL
Conserved hypothetical protein YhaL.
  
     0.763
sda
Sda.
  
     0.759
ytzH
YtzH.
  
    0.758
yhdB
Conserved hypothetical protein YhdB.
  
     0.754
ysxE
Conserved protein YsxE.
  
     0.746
BL02795
Hypothetical protein.
  
     0.746
BL02930
Conserved hypothetical protein.
  
     0.744
BL03704
Conserved hypothetical protein.
  
    0.743
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.