STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yuzDConserved protein YuzD. (108 aa)    
Predicted Functional Partners:
yuzB
Conserved protein YuzB; Belongs to the UPF0349 family.
 
     0.759
ytpQ
Conserved protein YtpQ; Belongs to the UPF0354 family.
  
     0.689
yutI
Conserved protein YutI.
       0.660
yfhH
Conserved protein YfhH.
  
     0.633
yjcG
Conserved protein YjcG; Belongs to the 2H phosphoesterase superfamily. YjcG family.
  
     0.627
yisL
Conserved membrane protein.
  
     0.611
ylbF
YlbF; Belongs to the UPF0342 family.
  
     0.584
ymcA
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.565
mreD
Cell-shape determining protein.
  
     0.564
ylaL
Hypothetical protein.
  
     0.532
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.