STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ymcCHypothetical protein. (177 aa)    
Predicted Functional Partners:
pksA
Transcriptional regulator.
 
     0.917
yqeB
Ribosomal protein L29.
  
     0.610
BL01961
Hypothetical protein.
      
 0.560
yhaI
Conserved hypothetical protein YhaI.
  
     0.526
yunF
Conserved protein YunF.
       0.501
yunE
Conserved protein YunE.
       0.472
swrC
Swarming and motility protein SwrC; Involved in the efflux of surfactin; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.456
yunD
Putative nucleotidase YunD; Belongs to the 5'-nucleotidase family.
       0.446
ywcB
Conserved protein YwcB.
  
     0.416
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.