STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pucFAmidase, hydantoinase/carbamoylase; Purine degradation. (417 aa)    
Predicted Functional Partners:
pucH
Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
 
 
 0.993
pucG
Aminotransferase, class V; Purine degradation.
 
 
  0.987
BL01096
Conserved hypothetical protein.
 
  0.979
pucR
Transcriptional regulator; Purine degradation.
 
   
 0.920
BL01095
Putative allointase/hydantoinase/amidohydrolase protein.
  
  
 
0.906
BL01119
Transcriptional regulator.
 
   
 0.705
BL01093
Major facilitator superfamily, putative transporter.
 
     0.597
yjmC
Putative ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.544
BL01097
Putative Ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.529
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
      
 0.499
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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