STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yurXConserved protein involved in Fe-S cluster formation YurX. (437 aa)    
Predicted Functional Partners:
yurY
ATP-binding protein involved in Fe-S cluster formation YurY.
 
 0.998
csd
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.992
nifU-2
Nitrogen-fixing protein NifU.
 
  
 0.984
sufB
FeS assembly protein SufB.
 
  
0.962
ycbU
Putative Aminotransferase, class V.
 
 
 0.889
nifU
Fe-S cluster formation protein.
 
  
 0.861
yitW
N-6 Adenine-specific DNA methylase YitW.
 
   
 0.817
yutM
Conserved protein YutM; Belongs to the HesB/IscA family.
  
 
 0.634
czcD
Cation-efflux system membrane protein.
       0.412
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.