STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yurYATP-binding protein involved in Fe-S cluster formation YurY. (261 aa)    
Predicted Functional Partners:
sufB
FeS assembly protein SufB.
 
 0.999
yurX
Conserved protein involved in Fe-S cluster formation YurX.
 
 0.999
csd
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.998
nifU-2
Nitrogen-fixing protein NifU.
 
  
 0.993
ycbU
Putative Aminotransferase, class V.
 
  
 0.902
nifU
Fe-S cluster formation protein.
 
  
 0.852
yitW
N-6 Adenine-specific DNA methylase YitW.
 
  
 0.847
nifS
NifS.
  
  
 0.630
yutM
Conserved protein YutM; Belongs to the HesB/IscA family.
  
 
 0.592
metP
Binding-protein-dependent transport systems inner membrane component.
     
 0.507
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.