STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yusXPeptidase M, neutral zinc metallopeptidases. (594 aa)    
Predicted Functional Partners:
yusW
YusW.
       0.632
BL05330
Putative carboxypeptidase; Belongs to the peptidase S11 family.
       0.586
ampS
Aminopeptidase.
 
   
 0.573
pepT
Peptidase T (tripeptidase); Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
  
 0.524
ykvY
Peptidase M24,putative metallopetidase.
      
 0.485
ywaD
Aminopeptidase.
     
 0.467
ydiC
Peptidase M22, glycoprotease YdiC.
      
 0.464
BL00799
Hypothetical protein.
  
     0.434
yusZ
Short-chain dehydrogenase/reductase YusZ; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.424
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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