STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydbJProbable ABC transport system ATP-binding protein. (308 aa)    
Predicted Functional Partners:
ydbK
Probable ABC transport system permease protein YdbK.
 
   0.933
lanI
Lantibiotic immunity protein.
 
   0.747
yhcI
Putative permease YhcI.
 
   0.746
BL02188
Proton/sodium-glutamate symport protein; BL02188 similar to gltT from Bacillus subtilis; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.572
ydbL
YdbL.
       0.540
ydbI
Conserved membrane protein YdbI.
     
 0.512
BL01807
Putative permease.
  
   0.477
BL05021
Conserved hypothetical protein.
 
   0.433
ycbO
Conserved hypothetical protein YcbO.
 
   0.432
yfiN
ABC transporter, family 2,ABC transporter, family 2.
  
    0.429
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.