STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbKProbable ABC transport system permease protein YdbK. (255 aa)    
Predicted Functional Partners:
ydbJ
Probable ABC transport system ATP-binding protein.
 
  0.954
yhcH
ABC transporter YhcH.
 
  0.837
lanH
Lantibiotic immunity protein,ABC transporter.
 
  0.701
ycbN
ABC transporter YcbN.
 
  0.635
BL02188
Proton/sodium-glutamate symport protein; BL02188 similar to gltT from Bacillus subtilis; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.572
spaF
ABC transporter SpaF.
  
  0.559
BL03460
Putative ABC transporter.
  
  0.559
ytrB
ABC transporter YtrB.
   
  0.555
yvfR
ABC transporter.
   
  0.555
BL00284
ABC transporter.
   
  0.555
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.