STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbMPutative Acyl-CoA dehydrogenase YdbM; Similar to butyryl-CoA dehydrogenase. (382 aa)    
Predicted Functional Partners:
yusL
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL.
  
 0.969
etfA
Electron transfer flavoprotein (alpha subunit).
 0.933
etfB
Electron transfer flavoprotein (beta subunit).
 
 
 0.902
yusK
Putative acetyl-CoA C-acyltransferase YusK; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.865
yhaR
Enoyl-CoA hydratase/isomerase YhaR.
  
  0.834
yngF
Enoyl-CoA hydratase/isomerase YngF; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.826
ysiB
Enoyl-CoA hydratase/isomerase YsiB; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.819
BL00199
Alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.813
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
  
 
 0.778
ribD
Riboflavin-specific deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
 0.771
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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