STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydbTConserved membrane protein. (493 aa)    
Predicted Functional Partners:
ydbS
Conserved membrane protein YdbS.
 
  
 0.997
sppA
Signal peptide peptidase.
 
    0.672
ydbR
Probable ATP-dependent RNA helicase YdbR; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
       0.666
BL03126
Hypothetical protein.
      
 0.596
rok
Rok.
      
 0.550
yteJ
Conserved membrane protein YteJ.
 
    0.544
ylaI
YlaI.
  
     0.440
ykuJ
YkuJ.
      
 0.416
ybcL
Probable transporter; Major facilitator superfamily.
      
 0.405
ecsB
ABC transporter (membrane protein).
  
    0.403
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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