STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bprBBacillopeptidase F. (1432 aa)    
Predicted Functional Partners:
BL03138
Conserved hypothetical protein.
  
     0.640
yhjD
Conserved hypothetical protein YhjD.
  
     0.630
yukA
Conserved protein YukA.
 
 
 0.568
yhcN
Conserved hypothetical protein.
  
     0.556
BL00800
Hypothetical protein.
  
    0.534
BL05060
Hypothetical protein.
  
     0.497
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
   
 
 0.478
bprA
Bacillopeptidase F.
 
   
0.475
BL07035
Hypothetical protein; BLi02070.
  
 
 0.469
yukE
Conserved protein YukE; Belongs to the WXG100 family.
 
   
 0.468
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.