STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yloUHighly conserved hypothetical protein YloU. (120 aa)    
Predicted Functional Partners:
yloV
Glycerone kinase protein.
 
  
 0.996
ylxM
Bipartite response regulator, C-terminal effector; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.647
sdaAB
L-serine dehydratase (beta chain); Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.624
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.604
degV
DegV.
 
    0.603
degVA
DegVA.
 
    0.598
sdaAA
L-serine dehydratase (alpha chain); Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.595
recG
ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.595
yvcL
Conserved protein YvcL; Involved in cell division and chromosome segregation.
  
     0.587
yrzL
Conserved protein YrzL; Belongs to the UPF0297 family.
  
  
 0.561
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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