STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsdRPutative Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1035 aa)    
Predicted Functional Partners:
hsdS
HsdS.
 
  
 0.980
hsdM
Putative Type I restriction-modification system M subunit.
 
  
 0.978
BL05391
Hypothetical protein.
 
   
 0.949
hsdM1
Type I restriction modification system protein HsdMI.
 
  
 0.939
BL02383
Hypothetical protein.
 
  
 0.938
hsdSIB
Type I RM system specificity subunit HsdIB.
 
  
 0.902
BL02386
Hypothetical protein.
 
    0.895
hsdIA
Type I Restriction Modification system protein HsdIA.
 
  
 0.657
BL02385
Hypothetical protein.
       0.537
BL00175
Hypothetical protein.
       0.500
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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