STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wprACell wall-associated protease. (1019 aa)    
Predicted Functional Partners:
blaSE
Glutamyl Endo peptidase; Specific for hydrolysis of peptide bonds on the carboxyl side of acidic amino acid residues, with a strong preference for Glu.
     
 0.631
ywoF
Polysaccharide Lyase Family 9,YwoF.
  
   0.493
BL00754
Hypothetical protein.
  
   0.472
epr
Extracellular serine protease; Belongs to the peptidase S8 family.
  
   
0.444
vpr
Extracellular serine protease; Belongs to the peptidase S8 family.
  
   
0.428
yrhH
Putative SAM dependent methyltransferase YrrH.
  
    0.423
BL02397
Transcriptional regulator.
   
   0.418
yloB
ATPase, E1-E2 type protein.
   
   0.407
aprX
Alkaline serine protease; Belongs to the peptidase S8 family.
  
   
0.406
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
      
 0.403
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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