STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ythACytochrome bd ubiquinol oxidase, subunit I. (441 aa)    
Predicted Functional Partners:
ythB
Conserved hypothetical protein YthB.
 
 0.999
cydB
Cytochrome bd ubiquinol oxidase (subunit II).
 0.998
cydA
Cytochrome bd ubiquinol oxidase (subunit I).
  
  
 
0.923
cydC
ABC membrane transporter (ATP-binding protein).
 
  
 0.907
cydD
ABC membrane transporter (ATP-binding protein).
 
  
 0.853
sdhA
Succinate dehydrogenase (flavoprotein subunit).
  
  
 0.642
sdhB
Succinate dehydrogenase (iron-sulfur protein).
  
  
 0.636
ytiB
Putative Carbonic anhydrase.
     
 0.620
ycgM
Putative proline dehydrogenase YcgM.
  
  
 0.585
qoxD
Cytochrome aa3 quinol oxidase (subunit IV).
     
 0.564
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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