STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
kdgA2-keto-3-deoxygluconate-6-phosphate aldolase. (204 aa)    
Predicted Functional Partners:
kdgK
2-keto-3-deoxygluconate kinase.
 
 
 0.996
BL03849
2-keto-3-deoxygluconate kinase.
 
 
 0.988
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
  
  
 0.931
BL03850
2-keto-3-deoxygluconate-6-phosphate aldolase.
  
  
 
0.917
ysfC
Glycolate oxidase subunit GlcD.
   
 
 0.911
BL02646
Isocitrate lyase.
     
 0.905
BL02138
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain,D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.
    
  0.903
yvcT
Probable 2-ketogluconate reductase YvcT; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.903
ysfD
4Fe-4S ferredoxin, iron-sulfur binding domain; glcF in Bacillus thuringiensis.
     
  0.900
BL02644
Malate synthase A; Belongs to the malate synthase family.
     
  0.900
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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