STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kdgRTranscriptional regulator. (338 aa)    
Predicted Functional Partners:
gltA
Glutamate synthase (large subunit).
    
 
 0.782
kdgK
2-keto-3-deoxygluconate kinase.
 
  
 0.782
dhbF
DhbF.
    
 
 0.745
ptsH
Histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein).
    
 
 0.697
kdgA
2-keto-3-deoxygluconate-6-phosphate aldolase.
  
  
 0.653
lchAC
Lichenysin synthetase C.
    
   0.633
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
  
  
 0.521
BL03849
2-keto-3-deoxygluconate kinase.
 
  
 0.507
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.485
kduD
2-keto-3-deoxygluconate oxidoreductase.
   
   0.484
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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