STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydbDGeneral stress protein,putative manganese-containing catalase. (273 aa)    
Predicted Functional Partners:
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.753
yhdF
Short-chain dehydrogenase/reductase SDR YhdF.
  
  
 0.695
ydaD
Putative Short-chain dehydrogenase/reductase YdaD; Similar to alcohol dehydrogenase.
  
  
 0.686
cotJB
CotJB.
 
  
 0.674
sodF
Superoxide dismutase.
   
 
 0.660
BL05332
Hypothetical protein.
  
     0.656
adhB
Alcohol dehydrogenase.
 
     0.634
yqjF
Conserved protein YqjF.
 
     0.592
ydaG
FMN-binding split barrel domain protein YdaG.
  
  
 0.578
BL00459
Hypothetical protein.
 
     0.563
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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