STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yaaQYaaQ. (109 aa)    
Predicted Functional Partners:
yaaR
Conserved hypothetical protein YaaR.
  
    0.930
holB
DNA polymerase III (delta' subunit).
  
    0.881
yaaT
Putative signal peptidase II YaaT; Involved in the transduction of signals to the phosphorelay for initiation of sporulation, similar to signal peptidase II, contains PSP1_C terminal domain.
  
    0.849
yabA
DnaA and DnaN interacting protein containing domain DUF972- YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.797
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
    0.758
yaaO
Putative Orn/Lys/Arg decarboxylase, C-terminal YaaO; Probable lysine decarboxylase.
  
    0.738
pstA
Phosphate ABC transporter (permease).
      
 0.704
yabC
Putative methyltransferase YabC containing domain UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.680
yazA
Putative Excinuclease ABC, C subunit, N-terminal YazA; Belongs to the UPF0213 family.
       0.680
yabB
Conserved hypothetical protein containing SAM (and some other nucleotide) binding motif YabB.
       0.680
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.