STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yuaEHypothetical protein. (160 aa)    
Predicted Functional Partners:
ykkA
Conserved hypothetical protein YkkA.
      
 0.705
BL01147
Hypothetical protein.
      
 0.672
ydaL
YdaL.
  
     0.636
yisT
Conserved protein YisT.
      
 0.594
ydaN
Putative cellulose synthase.
 
     0.575
BL02561
Hypothetical protein; Cellular Component: membrane.
       0.568
ydaG
FMN-binding split barrel domain protein YdaG.
  
     0.556
rapK
Response regulator aspartate phosphatase.
  
     0.545
ysdB
Conserved protein YsdB.
  
     0.541
ydaJ
Putative Glycoside transferase.
  
     0.511
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.