STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqeBRibosomal protein L29. (224 aa)    
Predicted Functional Partners:
yfiR
Putative transcriptional regulator YfiR.
 
     0.866
BL02711
Conserved hypothetical kinase-like protein.
  
     0.657
ymcC
Hypothetical protein.
  
     0.610
ywcB
Conserved protein YwcB.
  
     0.556
pksA
Transcriptional regulator.
  
     0.546
vgb
Putative soluble quinoprotein glucose dehydrogenase protein; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid.
  
     0.538
rapA
Response regulator aspartate phosphatase.
  
     0.515
BL05122
Hypothetical protein.
  
     0.480
BL01668
Hypothetical protein.
  
     0.417
rapE
Response regulator aspartate phosphatase.
  
     0.415
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.