STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
patBAminotransferase PatB. (387 aa)    
Predicted Functional Partners:
yitJ
Homocysteine S-methyltransferase.
    
 0.821
metH
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase MetH; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.787
yjcI
Cys/Met metabolism pyridoxal-phosphate-dependent enzymes.
 
 
 0.718
yrhB
Cystathionine gamma-lyase YrhB.
 
 
 0.673
yjcJ
Putative Cystathionine beta-lyase.
 
 
 0.655
secDF
Protein-export membrane protein SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
    
  0.623
ytkP
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.620
cysK
Cysteine synthetase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.620
yrhA
Putative cysteine synthase YrhA.
    
 0.620
yclC
Carboxylyase-related protein YclC; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives.
      
 0.611
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.