STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gbsAGlycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (490 aa)    
Predicted Functional Partners:
gbsB
Alcohol dehydrogenase.
  
 0.997
yuaC
Hypothetical protein; Belongs to the GbsR family.
 
   
 0.710
ycgM
Putative proline dehydrogenase YcgM.
 
 0.582
pepA
Peptidase M17, cytosol aminopeptidase, C-terminal; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
 0.545
yusL
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL.
  
 0.524
yuaD
Hypothetical protein.
       0.489
opuCC
Glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein).
      
 0.437
gltA
Glutamate synthase (large subunit).
  
  
 0.432
citG
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.427
opuE
Proline transporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.418
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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