STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yufKHypothetical protein. (185 aa)    
Predicted Functional Partners:
malK
Putative Histidine kinase.
     
 0.845
BL02112
Hypothetical protein.
  
   
 0.713
ykwB
GCN5-related N-acetyltransferase.
      
 0.700
hpr
Transcriptional regulator Hpr; Negative regulator of protease production and sporulation.
  
     0.694
yfiQ
Putative Acyltransferase 3 YfiQ.
  
     0.685
ytlQ
Conserved protein YtlQ.
  
     0.662
fliK
Flagellar protein FliK.
  
     0.660
yqhP
Conserved membrane protein YqhP.
  
     0.634
pbpD
Penicillin-binding protein/Glycosyl Transferase Family 51.
  
     0.631
ylqG
Conserved hypothetical protein.
  
     0.622
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.