Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
codY | degQ | BL01276 | BL02609 | Transcriptional regulator; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | 0.422 |
comQ | comX | BL02608 | BL02607 | Transcriptional regulator; Belongs to the FPP/GGPP synthase family. | Competence pheromone precursor (pheromone peptide aa 46->55, modified). | 0.898 |
comQ | degQ | BL02608 | BL02609 | Transcriptional regulator; Belongs to the FPP/GGPP synthase family. | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | 0.508 |
comX | comQ | BL02607 | BL02608 | Competence pheromone precursor (pheromone peptide aa 46->55, modified). | Transcriptional regulator; Belongs to the FPP/GGPP synthase family. | 0.898 |
comX | degQ | BL02607 | BL02609 | Competence pheromone precursor (pheromone peptide aa 46->55, modified). | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | 0.438 |
degQ | codY | BL02609 | BL01276 | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | Transcriptional regulator; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | 0.422 |
degQ | comQ | BL02609 | BL02608 | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | Transcriptional regulator; Belongs to the FPP/GGPP synthase family. | 0.508 |
degQ | comX | BL02609 | BL02607 | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | Competence pheromone precursor (pheromone peptide aa 46->55, modified). | 0.438 |
degQ | lchAA | BL02609 | BL01726 | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | Lichenysin synthetase A. | 0.613 |
lchAA | degQ | BL01726 | BL02609 | Lichenysin synthetase A. | DegQ; Stimulates the phosphotransfer from phospho-DegS to DegU. Affects protease and levansucrose production (By similarity). | 0.613 |