STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yueBEukaryotic DNA topoisomerases I, dispensable insert. (1009 aa)    
Predicted Functional Partners:
yukA
Conserved protein YukA.
 
  
 0.995
yukC
Conserved protein YukC.
 
  
 0.991
yukE
Conserved protein YukE; Belongs to the WXG100 family.
 
   
 0.974
yueC
Hypothetical protein.
  
  
 0.972
yukD
Conserved ubiqutin-like protein YukD; Belongs to the EsaB family.
  
  
 0.960
yueD
Short-chain dehydrogenase/reductase SDR.
  
  
 0.887
BL01910
Transposase protein.
  
     0.760
BL01584
Putative transposase.
  
     0.758
yngD
Conserved protein YngD.
  
     0.670
csbA
Putative membrane protein.
  
     0.629
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.