STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ipiIntracellular proteinase inhibitor Ipi. (150 aa)    
Predicted Functional Partners:
yitT
Conserved protein YitT.
  
    0.886
tasA
Translocation-dependent antimicrobial spore component.
  
     0.683
ytrC
Putative permease YtrC.
  
     0.658
yitS
Conserved protein YitS.
       0.627
BL00365
Hypothetical protein.
  
     0.602
BL05060
Hypothetical protein.
  
     0.598
ykyA
Putative transcription factor,conserved hypothetical.
  
     0.554
yfiQ
Putative Acyltransferase 3 YfiQ.
  
     0.550
BL05244
Response regulator aspartate phosphatase.
  
     0.505
yvlB
Conserved hypothetical protein YvlB.
  
     0.496
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.