STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfNPutative oxidoreductase YdfN. (207 aa)    
Predicted Functional Partners:
ydfO
Glyoxalase domain protein YdfO.
  
  
 0.921
nasF
uroporphyrin-III C-methyltransferase.
  
 
 0.780
ywrF
Conserved protein YwrF.
  
 
  0.724
birA
Transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.672
BL02634
Hypothetical DNA-binding protein.
  
 
  0.603
yfiN
ABC transporter, family 2,ABC transporter, family 2.
  
  
 0.580
BL02838
Conserved hypothetical protein.
  
  
 0.549
yfiM
ABC transport system permease protein.
  
    0.498
nfrA1
FMN-containing NADPH-linked nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.492
nfrA2
NADPH-linked nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.485
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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