STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywrFConserved protein YwrF. (202 aa)    
Predicted Functional Partners:
ydfO
Glyoxalase domain protein YdfO.
 
 
  0.861
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
 
 
  0.836
dhbF
DhbF.
    
  0.759
ydfN
Putative oxidoreductase YdfN.
  
 
  0.724
lchAB
Lichenysin synthetase B.
    
  0.716
yolF
Phospholipase/carboxylesterase family protein.
 
    0.577
BL02638
Trp repressor binding protein, putative; Belongs to the WrbA family.
    
  0.574
BL02634
Hypothetical DNA-binding protein.
    
  0.539
lchAA
Lichenysin synthetase A.
    
  0.470
pyrK
Dihydroorotate dehydrogenase (electron transfer subunit); Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
 
  0.457
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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