STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL02646Isocitrate lyase. (423 aa)    
Predicted Functional Partners:
BL02644
Malate synthase A; Belongs to the malate synthase family.
 
 0.999
citB
Aconitate hydratase (aconitase); Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.832
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
  
 0.817
ptb
Phosphate butyryltransferase.
   
 
 0.805
pta
Phosphotransacetylase.
   
 
 0.805
citA
Citrate synthase I; Belongs to the citrate synthase family.
   
 
 0.662
BL02643
Hypothetical protein.
       0.630
ysfC
Glycolate oxidase subunit GlcD.
     
 0.618
BL01698
Putative ATP/GTP-binding protein.
     
 0.617
pucG
Aminotransferase, class V; Purine degradation.
    
 0.599
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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