STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yngAConserved membrane protein YngA. (131 aa)    
Predicted Functional Partners:
ykcB
Glycosyl transferase, family 39.
 
  
 0.869
yngB
UTP--glucose-1-phosphate uridylyltransferase YngB.
  
  
 0.840
yngC
Conserved membrane protein YngC.
     
 0.833
ykcC
Glycosyl transferase, family 2.
 
  
 0.808
BL02665
Putative UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.775
yclJ-2
Hypothetical sensory transduction protein YclJ.
      
 0.699
yycA
Glycosyl transferase, family 39.
 
  
 0.598
yvfF
Polysaccharide pyruvyl transferase YvfF.
  
     0.506
tuaE
TuaE.
 
    0.494
nucB
Nuclease.
  
     0.468
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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