STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cotZSpore coat protein (insoluble fraction). (149 aa)    
Predicted Functional Partners:
cotX
Spore coat protein (insoluble fraction).
 
  
 0.870
BL03137
Hypothetical protein.
  
     0.690
cotW
Spore coat protein (insoluble fraction).
  
  
 0.680
ybyB
Conserved hypothetical protein YbyB.
  
     0.679
yhaK
Hypothetical protein.
  
     0.668
safA
Morphogenetic protein associated with SpoVID.
  
   
 0.664
yhcQ
Conserved hypothetical protein YhcQ.
  
    0.664
ykyA
Putative transcription factor,conserved hypothetical.
  
     0.638
spoVIF
SpoVIF.
 
    0.630
cotE
Morphogenic protein.
  
  
 0.604
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.