Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoVIFSpoVIF. (85 aa)    
Predicted Functional Partners:
cotX
Spore coat protein (insoluble fraction).
   
    0.899
yqfQ
Tubulin YqfQ.
  
    0.813
cotY
Spore coat protein (insoluble fraction).
 
    0.779
ytrI
Conserved protein YtrI.
  
   
 0.771
yjbA
Conserved protein YjbA; Belongs to the UPF0736 family.
  
     0.760
cotV
Spore coat protein (insoluble fraction).
   
    0.742
yodI
Hypothetical protein.
  
    0.738
ylbD
Hypothetical protein.
  
    0.737
fliJ
Flagellar protein.
  
     0.731
ytpI
Conserved membrane protein YtpI.
  
     0.726
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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