STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpXPenicillin-binding protein. (389 aa)    
Predicted Functional Partners:
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.769
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
     
 0.745
BL05012
Hypothetical protein.
       0.510
ybbC
Conserved hypothetical protein YbbC.
    0.481
yngB
UTP--glucose-1-phosphate uridylyltransferase YngB.
      
 0.455
yvlD
Conserved membrane protein YvlD.
   
  
 0.455
dltB
DltB; Could be involved in the transport of activated D-alanine through the membrane.
 
    0.448
yqeZ
Intermembrane protease YqeZ.
   
  
 0.421
dhbF
DhbF.
  
  
 0.408
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.