STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybbDGlycoside hydrolase, family 3; Probable beta-hexosaminidase; Belongs to the glycosyl hydrolase 3 family. (643 aa)    
Predicted Functional Partners:
ybbE
Putative beta-lactamase YbbE.
  
 0.999
ybbC
Conserved hypothetical protein YbbC.
 
  
 0.992
ybbI
Putative sugar phosphate isomerase YbbI; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.952
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
     
 0.924
chiA
Chitinase precursor, Glycoside Hydrolase Family 18.
     
 0.902
ybbH
Probable transcriptional regulator YbbH.
 
  
 0.809
ybbF
Phosphotransferase system PTS, EIIB domain,Phosphotransferase system, EIIC; Probable PTS sucrose-specific enzyme IIBC component.
  
  
 0.710
murQ2
Hypothetical protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.632
cwlD
N-acetylmuramoyl-L-alanine amidase.
  
  
  0.566
nucB
Nuclease.
  
  
 0.524
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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