STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbEPutative beta-lactamase YbbE. (448 aa)    
Predicted Functional Partners:
ybbD
Glycoside hydrolase, family 3; Probable beta-hexosaminidase; Belongs to the glycosyl hydrolase 3 family.
 
 0.998
ybbC
Conserved hypothetical protein YbbC.
  
 0.997
ybbI
Putative sugar phosphate isomerase YbbI; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.860
ybbH
Probable transcriptional regulator YbbH.
 
  
 0.824
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.769
BL02680
Putative Glycoside Hydrolase Family 3.
  
 
 0.763
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
     
 0.745
ybbF
Phosphotransferase system PTS, EIIB domain,Phosphotransferase system, EIIC; Probable PTS sucrose-specific enzyme IIBC component.
  
    0.714
murQ2
Hypothetical protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.698
dacC
Penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase).
  
  
 0.633
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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