STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ypiFHypothetical protein. (148 aa)    
Predicted Functional Partners:
qcrC
Menaquinol:cytochrome c oxidoreductase (cytochrome b/c subunit); Component of the menaquinol-cytochrome c reductase complex.
 
    0.910
qcrA
Menaquinol:cytochrome c oxidoreductase (iron-sulfur subunit).
 
    0.903
qcrB
Menaquinol:cytochrome c oxidoreductase (cytochrome b subunit).
 
    0.789
ylaH
Hypothetical protein.
  
    0.778
yuiB
Conserved membrane protein YuiB.
  
     0.774
ytpI
Conserved membrane protein YtpI.
  
     0.773
ylbA
Hypothetical protein.
  
     0.773
ygzB
Hypothetical protein.
  
     0.772
kbaA
kinB signaling pathway activation protein KbaA; Involved in the activation of the KinB signaling pathway of sporulation.
  
     0.771
yqgY
Conserved protein YqgY.
  
     0.771
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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