STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypiBConserved hypothetical protein; Belongs to the UPF0302 family. (179 aa)    
Predicted Functional Partners:
ypiA
TPR-repeat containing conserved hypothetical protein.
 
    0.900
yrrS
Conserved protein YrrS.
  
     0.724
ypiF
Hypothetical protein.
 
     0.666
yacB
Conserved hypothetical protein YacB; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.
   
    0.638
mreD
Cell-shape determining protein.
  
     0.596
yvcD
Putative DNA binding protein.
 
     0.543
BL02828
Hypothetical protein.
  
     0.526
ywzB
Conserved protein YwzB.
  
     0.523
ytxH
Conserved protein YtxH.
  
    0.515
ylaI
YlaI.
  
     0.495
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.