STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycsGPutative branched chain amino acids transporter YcsG. (403 aa)    
Predicted Functional Partners:
ycsI
Conserved protein YcsI; Belongs to the D-glutamate cyclase family.
 
    0.983
ycsF
Putative lactam utilization protein YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.976
kipA
KipA.
 
  
 0.950
kipI
Kinase inhibitor KipI.
 
    0.949
kipR
Transcriptional regulator KipR.
  
    0.767
mntD
Manganese ABC transporter.
   
  
 0.551
BL03702
Transcriptional regulator.
   
  
 0.551
ycsK
Lipolytic enzyme, G-D-S-L; Lipase involved in spore germination; Belongs to the 'GDSL' lipolytic enzyme family.
  
    0.500
BL03958
Transcriptional regulator (IclR family).
  
    0.424
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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