STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycsIConserved protein YcsI; Belongs to the D-glutamate cyclase family. (262 aa)    
Predicted Functional Partners:
ycsG
Putative branched chain amino acids transporter YcsG.
 
    0.983
kipI
Kinase inhibitor KipI.
 
    0.930
ycsF
Putative lactam utilization protein YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.929
kipA
KipA.
 
    0.915
kipR
Transcriptional regulator KipR.
  
    0.798
pcp
Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
   
    0.536
BL03958
Transcriptional regulator (IclR family).
  
    0.517
ycsK
Lipolytic enzyme, G-D-S-L; Lipase involved in spore germination; Belongs to the 'GDSL' lipolytic enzyme family.
  
    0.490
BL03848
Transcriptional regulator (IclR family).
  
    0.435
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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