STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycsKLipolytic enzyme, G-D-S-L; Lipase involved in spore germination; Belongs to the 'GDSL' lipolytic enzyme family. (212 aa)    
Predicted Functional Partners:
ypmS
Conserved protein YpmS.
 
  
 0.758
kipR
Transcriptional regulator KipR.
 
    0.680
yvpA
Polysaccharide Lyase Family 3; Catalyzes the depolymerization of both polygalacturonate and pectins of methyl esterification degree from 22 to 89%, with an endo mode of action. In contrast to the majority of pectate lyases, displays high activity on highly methylated pectins (By similarity). Belongs to the polysaccharide lyase 3 family.
  
  0.606
celB
Glycoside Hydrolase Family 48.
  
  0.595
BL03515
Glycoside Hydrolase Family 73.
  
   0.594
kipA
KipA.
  
    0.581
kipI
Kinase inhibitor KipI.
  
    0.580
BL03514
Hypothetical phagelike protein.
  
   0.569
BL00967
Phage related protein.
  
   0.568
yozE
Hypothetical protein; Belongs to the UPF0346 family.
 
  
 0.560
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.