STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydaGFMN-binding split barrel domain protein YdaG. (140 aa)    
Predicted Functional Partners:
yflT
Conserved hypothetical protein YflT; General stress protein.
  
    0.766
gspA
Glycosyl Transferase Family 8.
   
  
 0.744
ytxH
Conserved protein YtxH.
   
  
 0.732
ydaT
Conserved protein YdaT.
  
    0.716
ykgA
Putative transferase, conserved hypothetical protein.
  
    0.686
ydbA
YdbA.
  
   
 0.635
yfkJ
Protein-tyrosine phosphatase YfkJ; Low molecular weight phosphotyrosine protein phosphatase.
   
    0.620
rsbW
Switch protein/serine kinase and anti-sigma factor (inhibitory sigma-B binding protein); Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
   
    0.619
yfkI
YfkI.
   
    0.619
ytxG
Conserved protein YtxG.
   
    0.614
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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