STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yheDConserved hypothetical protein YheD. (452 aa)    
Predicted Functional Partners:
yheC
Conserved hypothetical protein YheC.
 
  
0.959
ysxE
Conserved protein YsxE.
  
  
 0.759
yrrD
Photosynthetic reaction centre, H-chain, cytoplasmic.
  
     0.743
cotJA
CotJA.
  
  
 0.711
cotE
Morphogenic protein.
  
  
 0.692
ywiC
Conserved membrane protein, putative carboxy peptidase YwiC.
  
     0.674
yheE
Conserved hypothetical protein YheE.
       0.644
yxkF
Hypothetical protein with helix-turn-helix domain.
       0.627
yhaX
HAD-superfamily hydrolase protein YhaX.
  
  
 0.598
gerQ
GerQ; Essential for the localization of CwlJ in the spore coat and for spore germination triggered by calcium and dipicolinic acid (DPA). Its assembly into the spore coat is dependent on the coat morphogenetic proteins CotE and SpoIVA.
  
  
 0.590
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.