STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yxkFHypothetical protein with helix-turn-helix domain. (293 aa)    
Predicted Functional Partners:
yheE
Conserved hypothetical protein YheE.
       0.814
msmX
Multiple sugar-binding transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.777
yheD
Conserved hypothetical protein YheD.
       0.627
yheC
Conserved hypothetical protein YheC.
       0.535
BL00387
Hypothetical protein.
  
     0.522
yheB
Conserved hypothetical protein YheB.
       0.493
yheA
Conserved hypothetical protein YheA; Belongs to the UPF0342 family.
       0.458
yerC
Conserved protein YerC; Trp repressor/replication initiator.
  
     0.455
yvdF
Glycoside Hydrolase Family 13 YvdF; Putative neopullulanase.
  
     0.433
galT
Galactose-1-phosphate uridyltransferase.
  
     0.432
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.