STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL02838Conserved hypothetical protein. (644 aa)    
Predicted Functional Partners:
BL02837
Hypothetical protein; Molecular Function: carboxypeptidase A activity, Biological Process: proteolysis and peptidolysis.
 
  
 0.982
yfiN
ABC transporter, family 2,ABC transporter, family 2.
  
  
 0.745
thiF
ThiF.
     
 0.649
yodC
Putative Nitroreductase.
 
  
 0.609
BL01811
Conserved hypothetical protein; Putative protease.
  
  
 0.597
BL02231
Hypothetical protein.
  
  
 0.597
ydiL
Aldo/keto reductase; Putative membrane-bound metalloprotease.
  
  
 0.597
ydhH
Hypothetical protein.
       0.568
nfrA2
NADPH-linked nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.549
ydfN
Putative oxidoreductase YdfN.
  
  
 0.549
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.