STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cueRTranscriptional activator of copZA operon (MerR family). (141 aa)    
Predicted Functional Partners:
yhdP
CBS domain, conserved hypothetical protein YhdP.
  
    0.746
copZ
Copper binding protein CopZ.
  
  
 0.742
ycnJ
Putative copper export protein YcnJ.
      
 0.739
yvgZ
Conserved hypothetical protein YvgZ.
      
 0.734
ymfP
Putative DNA binding protein YmfP.
  
   
 0.636
mtaB
Transcriptional regulator (MerR family); Transcriptional activator of multidrug-efflux transporter genes.
  
   
 0.593
BL03129
Hypothetical DNA-binding protein.
      
 0.593
bmrR
Transcriptional regulator.
  
   
 0.573
yhdT
CBS domain conserved hypothetical protein YhdT.
  
    0.554
mtaD
Transcriptional regulator (MerR family); BL01754 similar to mta from Bacillus subtilis.
  
   
 0.489
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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