STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrkCConserved hypothetical protein. (180 aa)    
Predicted Functional Partners:
BL03053
Probable transcriptional regulator (AraC/XylS family).
  
 
 0.464
dhbF
DhbF.
     
 0.438
sigM
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-M); Belongs to the sigma-70 factor family. ECF subfamily.
       0.410
yhdL
Conserved hypothetical protein.
       0.410
yhdK
Conserved hypothetical protein; Similar to YhdK in B.subtilis.
       0.410
ytlA
Putative sulfonate transport system substrate-binding protein YtlA.
  
    0.401
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.