STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhaOConserved hypothetical protein YhaO; Molecular Function: hydrolase activity. (408 aa)    
Predicted Functional Partners:
sbcC
ABC transporter, exonuclease SbcC.
  
 0.987
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 0.983
yhaN
Conserved hypothetical protein YhaN.
 
 
 0.960
ypcP
Putative 5'-3' exonuclease.
   
 0.834
BL01304
ATP-dependent DNA helicase.
   
 0.799
recQ
Hypothetical ATP-dependent DNA helicase RecQ.
   
 0.799
BL00458
Hypothetical protein.
    
  0.773
dinG
ATP-dependent helicase; 3'-5' exonuclease.
  
 0.754
ybaR
Putative Sulfate transporter/antisigma-factor antagonist YbaR.
   
   0.712
yvdB
Sulfate transporter/antisigma-factor antagonist.
   
   0.712
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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